更新时间:2023-10-03 12:34:46
尝试一个简单的例子,为了方便起见,我将使用方便的 toolz
import sys
import base64
if sys.version_info<(3,):
将cPickle导入为pickle
else:
从toolz.functoolz导入pickle
导入组合
rdd = sc.parallelize([(1,{foo:bar}),(2,{bar:foo})])
现在,您的代码现在不是完全可移植的。 code>返回 str
,而在Python 3中它返回 tes
。让我们来说明一下:
Python 2
type(base64.b64encode(pickle.dumps({foo:bar})))
## str
Python 3 b $ b
type(base64.b64encode(pickle.dumps({foo:bar})))
## bytes
$ b $ p $所以让我们将解码添加到流水线中:
#相当于
#def pickle_and_b64(x):
#return base64.b64encode(pickle.dumps(x))。decode (ascii)
pickle_and_b64 =撰写(
lambda x:x.decode(ascii),
base64.b64encode,
pickle.dumps
$ / code>
请注意,这不会假设任何特定形状的数据。因此,我们将使用 mapValues
来仅序列化键:
serialized = rdd.mapValues(pickle_and_b64)
serialized.first()
## 1,u'KGRwMApTJ2ZvbycKcDEKUydiYXInCnAyCnMu')
现在我们可以按照简单格式进行操作并保存:
from tempfile import mkdtemp
import os
outdir = os.path.join(mkdtemp(),foo)
serialized.map(lambda x:{0} \格式(* x))。saveAsTextFile(outdir)
读取文件我们逆过程:
#相当于
#def b64_and_unpickle(x):
#return pickle .loads(base64.b64decode(x))
b64_and_unpickle = compose(
pickle.loads,
base64.b64decode
)
解码=(sc.textFile(outdir)
.map(lambda x:x.split(\ t))#在Python 3中,我们可以简单地使用str.split
.mapValues(b64_and_unpickle) )
de coded.first()
##(u'1',{'foo':'bar'})
Inspired from this question, I wrote some code to store an RDD (which was read from a Parquet file), with a Schema of (photo_id, data), in pairs, delimited by tabs, and just as a detail base 64 encode it, like this:
def do_pipeline(itr):
...
item_id = x.photo_id
def toTabCSVLine(data):
return '\t'.join(str(d) for d in data)
serialize_vec_b64pkl = lambda x: (x[0], base64.b64encode(cPickle.dumps(x[1])))
def format(data):
return toTabCSVLine(serialize_vec_b64pkl(data))
dataset = sqlContext.read.parquet('mydir')
lines = dataset.map(format)
lines.saveAsTextFile('outdir')
So now, the point of interest: How to read that dataset and print for example its deserialized data?
I am using Python 2.6.6.
My attempt lies here, where for just verifying that everything can be done, I wrote this code:
deserialize_vec_b64pkl = lambda x: (x[0], cPickle.loads(base64.b64decode(x[1])))
base64_dataset = sc.textFile('outdir')
collected_base64_dataset = base64_dataset.collect()
print(deserialize_vec_b64pkl(collected_base64_dataset[0].split('\t')))
which calls collect(), which for testing is OK, but in a real-world scenario would struggle...
Edit:
When I tried zero323's suggestion:
foo = (base64_dataset.map(str.split).map(deserialize_vec_b64pkl)).collect()
I got this error, which boils down to this:
PythonRDD[2] at RDD at PythonRDD.scala:43
16/08/04 18:32:30 WARN TaskSetManager: Lost task 4.0 in stage 0.0 (TID 4, gsta31695.tan.ygrid.yahoo.com): org.apache.spark.api.python.PythonException: Traceback (most recent call last):
File "/grid/0/tmp/yarn-local/usercache/gsamaras/appcache/application_1470212406507_56888/container_e04_1470212406507_56888_01_000009/pyspark.zip/pyspark/worker.py", line 98, in main
command = pickleSer._read_with_length(infile)
File "/grid/0/tmp/yarn-local/usercache/gsamaras/appcache/application_1470212406507_56888/container_e04_1470212406507_56888_01_000009/pyspark.zip/pyspark/serializers.py", line 164, in _read_with_length
return self.loads(obj)
File "/grid/0/tmp/yarn-local/usercache/gsamaras/appcache/application_1470212406507_56888/container_e04_1470212406507_56888_01_000009/pyspark.zip/pyspark/serializers.py", line 422, in loads
return pickle.loads(obj)
UnpicklingError: NEWOBJ class argument has NULL tp_new
at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRDD.scala:166)
at org.apache.spark.api.python.PythonRunner$$anon$1.<init>(PythonRDD.scala:207)
at org.apache.spark.api.python.PythonRunner.compute(PythonRDD.scala:125)
at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:70)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:306)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:270)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
at org.apache.spark.scheduler.Task.run(Task.scala:89)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:227)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
16/08/04 18:32:30 ERROR TaskSetManager: Task 12 in stage 0.0 failed 4 times; aborting job
16/08/04 18:32:31 WARN TaskSetManager: Lost task 14.3 in stage 0.0 (TID 38, gsta31695.tan.ygrid.yahoo.com): TaskKilled (killed intentionally)
16/08/04 18:32:31 WARN TaskSetManager: Lost task 13.3 in stage 0.0 (TID 39, gsta31695.tan.ygrid.yahoo.com): TaskKilled (killed intentionally)
16/08/04 18:32:31 WARN TaskSetManager: Lost task 16.3 in stage 0.0 (TID 42, gsta31695.tan.ygrid.yahoo.com): TaskKilled (killed intentionally)
---------------------------------------------------------------------------
Py4JJavaError Traceback (most recent call last)
/homes/gsamaras/code/read_and_print.py in <module>()
17 print(base64_dataset.map(str.split).map(deserialize_vec_b64pkl))
18
---> 19 foo = (base64_dataset.map(str.split).map(deserialize_vec_b64pkl)).collect()
20 print(foo)
/home/gs/spark/current/python/lib/pyspark.zip/pyspark/rdd.py in collect(self)
769 """
770 with SCCallSiteSync(self.context) as css:
--> 771 port = self.ctx._jvm.PythonRDD.collectAndServe(self._jrdd.rdd())
772 return list(_load_from_socket(port, self._jrdd_deserializer))
773
/home/gs/spark/current/python/lib/py4j-0.9-src.zip/py4j/java_gateway.py in __call__(self, *args)
811 answer = self.gateway_client.send_command(command)
812 return_value = get_return_value(
--> 813 answer, self.gateway_client, self.target_id, self.name)
814
815 for temp_arg in temp_args:
/home/gs/spark/current/python/lib/py4j-0.9-src.zip/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name)
306 raise Py4JJavaError(
307 "An error occurred while calling {0}{1}{2}.\n".
--> 308 format(target_id, ".", name), value)
309 else:
310 raise Py4JError(
Py4JJavaError: An error occurred while calling z:org.apache.spark.api.python.PythonRDD.collectAndServe.
Let's try a simple example. For convenience I'll be using handy toolz
library but it is not really required here.
import sys
import base64
if sys.version_info < (3, ):
import cPickle as pickle
else:
import pickle
from toolz.functoolz import compose
rdd = sc.parallelize([(1, {"foo": "bar"}), (2, {"bar": "foo"})])
Now, your code is not exactly portable right now. In Python 2 base64.b64encode
returns str
, while in Python 3 it returns bytes
. Lets illustrate that:
-
Python 2
type(base64.b64encode(pickle.dumps({"foo": "bar"})))
## str
-
Python 3
type(base64.b64encode(pickle.dumps({"foo": "bar"})))
## bytes
So lets add decoding to the pipeline:
# Equivalent to
# def pickle_and_b64(x):
# return base64.b64encode(pickle.dumps(x)).decode("ascii")
pickle_and_b64 = compose(
lambda x: x.decode("ascii"),
base64.b64encode,
pickle.dumps
)
Please note that this doesn't assume any particular shape of the data. Because of that, we'll use mapValues
to serialize only keys:
serialized = rdd.mapValues(pickle_and_b64)
serialized.first()
## 1, u'KGRwMApTJ2ZvbycKcDEKUydiYXInCnAyCnMu')
Now we can follow it with simple format and save:
from tempfile import mkdtemp
import os
outdir = os.path.join(mkdtemp(), "foo")
serialized.map(lambda x: "{0}\t{1}".format(*x)).saveAsTextFile(outdir)
To read the file we reverse the process:
# Equivalent to
# def b64_and_unpickle(x):
# return pickle.loads(base64.b64decode(x))
b64_and_unpickle = compose(
pickle.loads,
base64.b64decode
)
decoded = (sc.textFile(outdir)
.map(lambda x: x.split("\t")) # In Python 3 we could simply use str.split
.mapValues(b64_and_unpickle))
decoded.first()
## (u'1', {'foo': 'bar'})