尽管rhdf5软件包不在CRAN中，但它确实可以很好地工作.从生物导体

The rhdf5 package works really well, although it is not in CRAN. Install it from Bioconductor

# as of 2020-09-08, these are the updated instructions per
# https://bioconductor.org/install/

if (!requireNamespace("BiocManager", quietly = TRUE))
  install.packages("BiocManager")
BiocManager::install(version = "3.11")

并使用它:

library(rhdf5)

列出文件中的对象以查找要读取的数据组:

List the objects within the file to find the data group you want to read:

h5ls("path/to/file.h5")

读取HDF5数据:

mydata <- h5read("path/to/file.h5", "/mygroup/mydata")

检查结构:

str(mydata)

(请注意，多维数组可能会转置).您还可以阅读组，这些组将在R中命名为列表.

(Note that multidimensional arrays may appear transposed). Also you can read groups, which will be named lists in R.